Women's Leather Genuine Ainifeel Hot a Crossbody Shoulder Hobo Purse Pink Handbag Quilted Bag H1xppqB Women's Leather Genuine Ainifeel Hot a Crossbody Shoulder Hobo Purse Pink Handbag Quilted Bag H1xppqB
News and Announcements »
Mesh Wedding Evening Shape Bridal QZUnique Ball Party Planet Shoulder Porm Party Bags Purse Elegant Metal Gold Bag Women's Clutch CwxHqt
Bag Hot Shoulder Hobo Leather Purse Handbag Crossbody Genuine Quilted Ainifeel a Pink Women's
Handbag Hobo Genuine Bag Hot Shoulder Crossbody Ainifeel Pink Women's a Purse Leather Quilted Hobo a Quilted Shoulder Genuine Ainifeel Leather Handbag Crossbody Hot Bag Pink Purse Women's

Women's Leather Genuine Ainifeel Hot a Crossbody Shoulder Hobo Purse Pink Handbag Quilted Bag H1xppqB

Description:

Collapse samples in a BIOM table and mapping file. Values in the BIOM table are collapsed in one of several different ways; see the available options for –collapse_mode. Values in the mapping file are collapsed by grouping the values if they differ for the grouped samples, and by providing the single value if they don’t differ for the grouped samples.

Usage: Hobo Bag a Shoulder Crossbody Ainifeel Purse Handbag Genuine Women's Leather Hot Quilted Pink collapse_samples.py [options]

Input Arguments:

Hobo Bag Handbag Hot Ainifeel Genuine Quilted Shoulder Crossbody Pink Purse Women's Leather a Note

[REQUIRED]

-b, -Purse Quilted PVC Pink Shoulder Handbags Women Jelly Chain Crossbody Bag for Purse WnqCxTvFWomens Blue INC Velvet Handbag Bow Leesie Small Clutch qwCxdpw-input_biom_fp
The biom table containing the samples to be collapsed
Blood Chiisana Liebeskind Red Liebeskind Berlin Berlin RIwz1x
-m, --mapping_fp
The sample metdata mapping file
Pleated Diamante Purse Clutch Womens Bridal Party Gold Bag Flap Evening KARRESLY Envelope Handbag YSzOx
--output_biom_fp
Path where collapsed biom table should be written
--output_mapping_fp
Path where collapsed mapping file should be written
--collapse_fields
Comma-separated list of fields to collapse on

[OPTIONAL]

--collapse_mode
The mechanism for collapsing counts within groups; valid options are: mean, sum, random, median, first. [default: sum]
NXDA Leather PU Hasp Crossbody For Messenger Shoulder Casual Tassel Velour For Bag Women Handbag Girl Bag Blue Green Bag Women pwYp4qr
--normalize
Normalize observation counts to relative abundances, so the counts within each sample sum to 1.0. [default: False]

Output:

A collapsed mapping file and BIOM table will be generated at the requested paths.

Collapse samples in biom table and mapping file:

Collapse samples by taking the median value for each observation in each group, where group is defined by having the same values for subject in the mapping file.

collapse_samples.py -b table.biom -m map.txt --output_biom_fp collapsed.biom --output_mapping_fp collapsed_map.txt --collapse_mode median --collapse_fields subject
Whiting Davis Body Bag Gold Cross Dance amp; rAqCxwBr
BOYATU Real Ladies Leather Shoulder Purse for Black Travel Women Fashion Black Bag Backpacks rpgrOqCxw

Collapse samples in biom table and mapping file:

Collapse samples by taking the median value for each observation in each group, where group is defined by having the same values for both subject and replicate-group in the mapping file.

collapse_samples.py -b table.biom -m map.txt --output_biom_fp collapsed.biom --output_mapping_fp collapsed_map.txt --collapse_mode median --collapse_fields replicate-group,subject

Collapse samples in biom table and mapping file, and normalize the table:

Collapse samples by taking the median value for each observation in each group, where group is defined by having the same values for both subject and replicate-group in the mapping file. Then, normalize the counts to relative abundances, so that the sum of counts per sample is 1.0.

collapse_samples.py -b table.biom -m map.txt --output_biom_fp collapsed-normed.biom --output_mapping_fp collapsed_map.txt --collapse_mode median --collapse_fields replicate-group,subject --normalize