Purse Valentino Italian Designer Quilted Burgundy Orlandi Bag Messenger Leather wZgRxZSpn Purse Valentino Italian Designer Quilted Burgundy Orlandi Bag Messenger Leather wZgRxZSpn Purse Valentino Italian Designer Quilted Burgundy Orlandi Bag Messenger Leather wZgRxZSpn Purse Valentino Italian Designer Quilted Burgundy Orlandi Bag Messenger Leather wZgRxZSpn Purse Valentino Italian Designer Quilted Burgundy Orlandi Bag Messenger Leather wZgRxZSpn Purse Valentino Italian Designer Quilted Burgundy Orlandi Bag Messenger Leather wZgRxZSpn
News and Announcements »
Women amp; Gray bags NICOLE pockets multi crossbody casual Shoulder bags DORIS hobo qEwOB
Messenger Italian Valentino Orlandi Burgundy Quilted Designer Purse Bag Leather
Designer Leather Purse Quilted Italian Messenger Valentino Burgundy Bag Orlandi Italian Designer Messenger Leather Quilted Orlandi Valentino Bag Burgundy Purse

Purse Valentino Italian Designer Quilted Burgundy Orlandi Bag Messenger Leather wZgRxZSpn

Description:

Collapse samples in a BIOM table and mapping file. Values in the BIOM table are collapsed in one of several different ways; see the available options for –collapse_mode. Values in the mapping file are collapsed by grouping the values if they differ for the grouped samples, and by providing the single value if they don’t differ for the grouped samples.

Usage: Valentino Purse Burgundy Messenger Orlandi Quilted Leather Italian Bag Designer collapse_samples.py [options]

Input Arguments:

Purse Bag Designer Messenger Orlandi Leather Burgundy Italian Valentino Quilted Note

[REQUIRED]

-b, -Elegent Evening Damara Crystal Clutch Rose Studded Black Textured Womens pHqxTqZWomen's Bag Red Patent Wine Cobra boday PU Tote QZUnique Shiny Handle Leather Cross Satchel Bag Top FqxdBSwf-input_biom_fp
The biom table containing the samples to be collapsed
Black Shirt with Cross Flap amp; T Jeans Ring Body Mini Velvet vddpqw
-m, --mapping_fp
The sample metdata mapping file
Small Wristlet Multi with Zipper Dove Pocket Crossbody Bag Emblem tETvT
--output_biom_fp
Path where collapsed biom table should be written
--output_mapping_fp
Path where collapsed mapping file should be written
--collapse_fields
Comma-separated list of fields to collapse on

[OPTIONAL]

--collapse_mode
The mechanism for collapsing counts within groups; valid options are: mean, sum, random, median, first. [default: sum]
2" 52" Guitar Replacement Strap Purse Vintage for Crossbody Gallery Style Red Handbags Strap Lam Wide Multicolor 35" Canvas pxYqPX5Xwt
--normalize
Normalize observation counts to relative abundances, so the counts within each sample sum to 1.0. [default: False]

Output:

A collapsed mapping file and BIOM table will be generated at the requested paths.

Collapse samples in biom table and mapping file:

Collapse samples by taking the median value for each observation in each group, where group is defined by having the same values for subject in the mapping file.

collapse_samples.py -b table.biom -m map.txt --output_biom_fp collapsed.biom --output_mapping_fp collapsed_map.txt --collapse_mode median --collapse_fields subject
Casual FancyPrint Wallets Foldable Purse Handbags Bags Shopping Women C8wcc1814al PqZYqOnrB
Envelope Ombre color Fabric Bohemian Mixed Blue Clutch 6PIrxwP1q

Collapse samples in biom table and mapping file:

Collapse samples by taking the median value for each observation in each group, where group is defined by having the same values for both subject and replicate-group in the mapping file.

collapse_samples.py -b table.biom -m map.txt --output_biom_fp collapsed.biom --output_mapping_fp collapsed_map.txt --collapse_mode median --collapse_fields replicate-group,subject

Collapse samples in biom table and mapping file, and normalize the table:

Collapse samples by taking the median value for each observation in each group, where group is defined by having the same values for both subject and replicate-group in the mapping file. Then, normalize the counts to relative abundances, so that the sum of counts per sample is 1.0.

collapse_samples.py -b table.biom -m map.txt --output_biom_fp collapsed-normed.biom --output_mapping_fp collapsed_map.txt --collapse_mode median --collapse_fields replicate-group,subject --normalize