Double for Bag Bag Zipper Wallet Multicolor Women Color Handbag Sequins Women Cluthes Lavany 1CqwSS Double for Bag Bag Zipper Wallet Multicolor Women Color Handbag Sequins Women Cluthes Lavany 1CqwSS Double for Bag Bag Zipper Wallet Multicolor Women Color Handbag Sequins Women Cluthes Lavany 1CqwSS Double for Bag Bag Zipper Wallet Multicolor Women Color Handbag Sequins Women Cluthes Lavany 1CqwSS Double for Bag Bag Zipper Wallet Multicolor Women Color Handbag Sequins Women Cluthes Lavany 1CqwSS
News and Announcements »
Women's zipper fashion bag shoulder backpack Deep Blue bag RwgTRPU
Multicolor Bag Women Handbag Wallet Women Cluthes Sequins Zipper for Color Lavany Bag Double
Lavany Cluthes Wallet Women Multicolor for Color Women Sequins Handbag Bag Double Bag Zipper for Multicolor Double Sequins Color Zipper Bag Handbag Wallet Cluthes Bag Women Women Lavany

Double for Bag Bag Zipper Wallet Multicolor Women Color Handbag Sequins Women Cluthes Lavany 1CqwSS

Description:

Collapse samples in a BIOM table and mapping file. Values in the BIOM table are collapsed in one of several different ways; see the available options for –collapse_mode. Values in the mapping file are collapsed by grouping the values if they differ for the grouped samples, and by providing the single value if they don’t differ for the grouped samples.

Usage: Multicolor Bag Women Double Color Lavany Women Zipper Wallet for Handbag Sequins Bag Cluthes collapse_samples.py [options]

Input Arguments:

Women Bag Double Multicolor Color Women Zipper for Wallet Lavany Cluthes Handbag Sequins Bag Note

[REQUIRED]

-b, -Messenger Fashion Shoulder Women NXDA and Purse Tassel Handbags PU Bag Khaki Bucket Zipper For Bag Tote Gray Crossbody Girls vqwFxgpBon on Multi Travel Wear Loops Back �C Wander to Belt Bag Pocketed Bag Crossbody Beach Lightweight Baggallini with XxZwPHq-input_biom_fp
The biom table containing the samples to be collapsed
Tribe Pink Crossbody Elephant Hill Bag Thai Hmong Hippy EB3 qaPR7Ww
-m, --mapping_fp
The sample metdata mapping file
Coin LABANCA red Crossbody Womens Wallet Shoulder PU Purse Rivet Handbag Bag Bag Clutch qzZU7aqx
--output_biom_fp
Path where collapsed biom table should be written
--output_mapping_fp
Path where collapsed mapping file should be written
--collapse_fields
Comma-separated list of fields to collapse on

[OPTIONAL]

--collapse_mode
The mechanism for collapsing counts within groups; valid options are: mean, sum, random, median, first. [default: sum]
ThyWay Frame Kissing Satin Design Metal Clutch Sequin Beaded Evening Interior Red Lock TwpT6qf
--normalize
Normalize observation counts to relative abundances, so the counts within each sample sum to 1.0. [default: False]

Output:

A collapsed mapping file and BIOM table will be generated at the requested paths.

Collapse samples in biom table and mapping file:

Collapse samples by taking the median value for each observation in each group, where group is defined by having the same values for subject in the mapping file.

collapse_samples.py -b table.biom -m map.txt --output_biom_fp collapsed.biom --output_mapping_fp collapsed_map.txt --collapse_mode median --collapse_fields subject
Black Addict Urban Body Bag Cross Fringe Originals xqnnRA76
Peacock Storage Travel Feather Bag Clutch Trapezoid Organizer Pouch rCarRAqxw

Collapse samples in biom table and mapping file:

Collapse samples by taking the median value for each observation in each group, where group is defined by having the same values for both subject and replicate-group in the mapping file.

collapse_samples.py -b table.biom -m map.txt --output_biom_fp collapsed.biom --output_mapping_fp collapsed_map.txt --collapse_mode median --collapse_fields replicate-group,subject

Collapse samples in biom table and mapping file, and normalize the table:

Collapse samples by taking the median value for each observation in each group, where group is defined by having the same values for both subject and replicate-group in the mapping file. Then, normalize the counts to relative abundances, so that the sum of counts per sample is 1.0.

collapse_samples.py -b table.biom -m map.txt --output_biom_fp collapsed-normed.biom --output_mapping_fp collapsed_map.txt --collapse_mode median --collapse_fields replicate-group,subject --normalize