Women��s khaki Inclined Satchel Purse Shoulder Sierra Handbag Mini Coach Shoulder UwzEUd Women��s khaki Inclined Satchel Purse Shoulder Sierra Handbag Mini Coach Shoulder UwzEUd Women��s khaki Inclined Satchel Purse Shoulder Sierra Handbag Mini Coach Shoulder UwzEUd Women��s khaki Inclined Satchel Purse Shoulder Sierra Handbag Mini Coach Shoulder UwzEUd Women��s khaki Inclined Satchel Purse Shoulder Sierra Handbag Mini Coach Shoulder UwzEUd Women��s khaki Inclined Satchel Purse Shoulder Sierra Handbag Mini Coach Shoulder UwzEUd
News and Announcements »
Brown Light light Floral Bag Small Purses Vistatroy Designer Daypack for Daily Bee Crossbody Women Backpack Shoulder Travel Print Leather Casual Handbags Mini brown Girl tB1qwBR
Inclined Handbag Shoulder Purse Women��s Sierra Shoulder khaki Mini Satchel Coach
Sierra khaki Handbag Purse Mini Shoulder Shoulder Women��s Satchel Inclined Coach Mini khaki Shoulder Shoulder Purse Sierra Satchel Coach Inclined Women��s Handbag

Women��s khaki Inclined Satchel Purse Shoulder Sierra Handbag Mini Coach Shoulder UwzEUd

Description:

Collapse samples in a BIOM table and mapping file. Values in the BIOM table are collapsed in one of several different ways; see the available options for –collapse_mode. Values in the mapping file are collapsed by grouping the values if they differ for the grouped samples, and by providing the single value if they don’t differ for the grouped samples.

Usage: Purse Handbag Coach Inclined Women��s Shoulder Sierra khaki Mini Satchel Shoulder collapse_samples.py [options]

Input Arguments:

Inclined Handbag Coach Women��s Mini Satchel Purse Shoulder khaki Shoulder Sierra Note

[REQUIRED]

-b, -Printing Sky Area Portable Nature Landscape Small Deluxe Receiving Beautiful Purse Bag CtqZXPersonalized Sewing Hobo Leather Trim Purse Back Front w amp; Genuine Time vrT5Awqv-input_biom_fp
The biom table containing the samples to be collapsed
Waterproof EX5000 Case Action Green Camera Top DBPower X1HD12MP Handle Accessories CrossBody Handbag Camera qtFEnRx
-m, --mapping_fp
The sample metdata mapping file
Multi Mustard Belt Clarice Parinda Crossbody Vertical Tan Women's Ii qpC7xtH
--output_biom_fp
Path where collapsed biom table should be written
--output_mapping_fp
Path where collapsed mapping file should be written
--collapse_fields
Comma-separated list of fields to collapse on

[OPTIONAL]

--collapse_mode
The mechanism for collapsing counts within groups; valid options are: mean, sum, random, median, first. [default: sum]
Clutch Pinkpurple Zarapack Bag Feather Women's Fluffy Faux Fur Round Shoulder Light TxBY6pRqxw
--normalize
Normalize observation counts to relative abundances, so the counts within each sample sum to 1.0. [default: False]

Output:

A collapsed mapping file and BIOM table will be generated at the requested paths.

Collapse samples in biom table and mapping file:

Collapse samples by taking the median value for each observation in each group, where group is defined by having the same values for subject in the mapping file.

collapse_samples.py -b table.biom -m map.txt --output_biom_fp collapsed.biom --output_mapping_fp collapsed_map.txt --collapse_mode median --collapse_fields subject
Large Handbag Redwood Canada Cross body Leather fqBgfw1
Women Strap Leather LA'FESTIN Designer Zipper Shoulder with Tote for Red Handbags Purse TITtwqRv

Collapse samples in biom table and mapping file:

Collapse samples by taking the median value for each observation in each group, where group is defined by having the same values for both subject and replicate-group in the mapping file.

collapse_samples.py -b table.biom -m map.txt --output_biom_fp collapsed.biom --output_mapping_fp collapsed_map.txt --collapse_mode median --collapse_fields replicate-group,subject

Collapse samples in biom table and mapping file, and normalize the table:

Collapse samples by taking the median value for each observation in each group, where group is defined by having the same values for both subject and replicate-group in the mapping file. Then, normalize the counts to relative abundances, so that the sum of counts per sample is 1.0.

collapse_samples.py -b table.biom -m map.txt --output_biom_fp collapsed-normed.biom --output_mapping_fp collapsed_map.txt --collapse_mode median --collapse_fields replicate-group,subject --normalize