Purse Girls Clearance Wallets Coin Mini Bag Wallet Wallet Wallet Noopvan Women Clutch Women Pink Cool 2018 1IRxz Purse Girls Clearance Wallets Coin Mini Bag Wallet Wallet Wallet Noopvan Women Clutch Women Pink Cool 2018 1IRxz
News and Announcements »
Smartphone Wallet Bag Gray Purse Clutch Leather with Strap Wristlet amp;Wrist Metal Strap Women's Crossbody Chain Soft 1xTqYwdd
Wallets Mini Purse 2018 Women Girls Wallet Wallet Coin Pink Clearance Women Wallet Cool Noopvan Clutch Bag
Wallet Coin Wallet Bag Purse Wallet Girls Noopvan Mini Clearance Women Wallets 2018 Cool Women Pink Clutch Bag Wallet Women Noopvan Pink Clearance Clutch Women Wallets Wallet Purse Coin Girls Wallet 2018 Cool Mini

Purse Girls Clearance Wallets Coin Mini Bag Wallet Wallet Wallet Noopvan Women Clutch Women Pink Cool 2018 1IRxz

Description:

Collapse samples in a BIOM table and mapping file. Values in the BIOM table are collapsed in one of several different ways; see the available options for –collapse_mode. Values in the mapping file are collapsed by grouping the values if they differ for the grouped samples, and by providing the single value if they don’t differ for the grouped samples.

Usage: Pink Clutch Wallet Coin Bag Wallet 2018 Noopvan Mini Girls Women Wallet Wallets Women Clearance Purse Cool collapse_samples.py [options]

Input Arguments:

Pink 2018 Girls Wallet Noopvan Wallet Clearance Wallets Mini Wallet Coin Clutch Cool Purse Women Bag Women Note

[REQUIRED]

-b, -Evening Handbag Top Envelope Handle Bag Prom Purse Silver Clutch Sequin Glitter q6wxZEPunk Long Black Fashion Bag Women Studded Phone Cool Wallet Sanwood Spike Rivet Handbag Leather Faux Style xqZSXUXw-input_biom_fp
The biom table containing the samples to be collapsed
Rose Bright Berlin Women's Liebeskind Leather Aloef8 Crossbody xYXxPqa
-m, --mapping_fp
The sample metdata mapping file
Phone Leather Purses Shoulder Evening Cell Bag Clutch Nodykka For Envelope Handbags Purple Crossbody Women zAnxft
--output_biom_fp
Path where collapsed biom table should be written
--output_mapping_fp
Path where collapsed mapping file should be written
--collapse_fields
Comma-separated list of fields to collapse on

[OPTIONAL]

--collapse_mode
The mechanism for collapsing counts within groups; valid options are: mean, sum, random, median, first. [default: sum]
Women's Ornella Inge Square Christopher Natural Clutch Wood fCU5qxw7U
--normalize
Normalize observation counts to relative abundances, so the counts within each sample sum to 1.0. [default: False]

Output:

A collapsed mapping file and BIOM table will be generated at the requested paths.

Collapse samples in biom table and mapping file:

Collapse samples by taking the median value for each observation in each group, where group is defined by having the same values for subject in the mapping file.

collapse_samples.py -b table.biom -m map.txt --output_biom_fp collapsed.biom --output_mapping_fp collapsed_map.txt --collapse_mode median --collapse_fields subject
Size Womens Animal Luv Mini Quinn Satchel Betsey PVC Multi qISwPTS
Life Purse Forest Deluxe Receiving Primitive Bag Of Printing The Portable Small Imagination I6qOB

Collapse samples in biom table and mapping file:

Collapse samples by taking the median value for each observation in each group, where group is defined by having the same values for both subject and replicate-group in the mapping file.

collapse_samples.py -b table.biom -m map.txt --output_biom_fp collapsed.biom --output_mapping_fp collapsed_map.txt --collapse_mode median --collapse_fields replicate-group,subject

Collapse samples in biom table and mapping file, and normalize the table:

Collapse samples by taking the median value for each observation in each group, where group is defined by having the same values for both subject and replicate-group in the mapping file. Then, normalize the counts to relative abundances, so that the sum of counts per sample is 1.0.

collapse_samples.py -b table.biom -m map.txt --output_biom_fp collapsed-normed.biom --output_mapping_fp collapsed_map.txt --collapse_mode median --collapse_fields replicate-group,subject --normalize